Basic Information | |
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Taxon OID | 3300002549 Open in IMG/M |
Scaffold ID | JGI24130J36418_10000647 Open in IMG/M |
Source Dataset Name | Arctic peat soil from Barrow, Alaska - Barrow Graham LP Ref core NGADG0002-212 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 11613 |
Total Scaffold Genes | 8 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 4 (50.00%) |
Novel Protein Genes | 1 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (100.00%) |
Associated Families | 1 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia | (Source: IMG/M) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil → Arctic Peat Soil Microbial Communities From The Barrow Environmental Observatory Site, Barrow, Alaska, Usa |
Source Dataset Sampling Location | ||||||||
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Location Name | Barrow Environmental Observatory site, Barrow, Alaska, USA | |||||||
Coordinates | Lat. (o) | 71.29055 | Long. (o) | -156.788643 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F027693 | Metagenome | 194 | Y |
Protein ID | Family | RBS | Sequence |
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JGI24130J36418_100006474 | F027693 | GAGG | MSSDDKPTIVEAFLAQVRGVKSRIPLRTAGSVGDLNSLPGASRPAGSVALDFTCDMHGGRLMRLWMSPRSGDATFGGEAITGAWDSDTSERGSVVVTCIRQGCRNSARLTNDWLLASFRRVRADFEAGKGLPIALFXLSQVGVPSGRVPSLDQRAGTMYSSGA* |
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