NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI24130J36418_10004120

Scaffold JGI24130J36418_10004120


Overview

Basic Information
Taxon OID3300002549 Open in IMG/M
Scaffold IDJGI24130J36418_10004120 Open in IMG/M
Source Dataset NameArctic peat soil from Barrow, Alaska - Barrow Graham LP Ref core NGADG0002-212
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4957
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil → Arctic Peat Soil Microbial Communities From The Barrow Environmental Observatory Site, Barrow, Alaska, Usa

Source Dataset Sampling Location
Location NameBarrow Environmental Observatory site, Barrow, Alaska, USA
CoordinatesLat. (o)71.29055Long. (o)-156.788643Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F066535Metagenome / Metatranscriptome126Y

Sequences

Protein IDFamilyRBSSequence
JGI24130J36418_100041202F066535AGGAGMLNGQTFDEIVIVSQVDGAALTAAAAASMIPAAAKFTLPPNWCQIGRQILLRAAGKISSVITTPGTARFDVRLGTDVVFDGLAILLDSVAARTDAAWWLEILLTCRGIGAAATFMGHGRWSCEDILGVPATAPKGALTAMLPWNSAPAVGASFDSTVSQVIDVFFTQTAATGSLTCQQYSVSLLN*
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