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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300002557 Open in IMG/M |
| Scaffold ID | JGI25381J37097_1000360 Open in IMG/M |
| Source Dataset Name | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 08_20_2013_1_20cm |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 6049 |
| Total Scaffold Genes | 7 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 3 (42.86%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (50.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria | (Source: IMG/M) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Angelo Coastal Reserve, California, USA | |||||||
| Coordinates | Lat. (o) | 39.718176 | Long. (o) | -123.652732 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F001545 | Metagenome / Metatranscriptome | 673 | Y |
| F001681 | Metagenome / Metatranscriptome | 652 | Y |
| F001901 | Metagenome / Metatranscriptome | 620 | Y |
| F009972 | Metagenome / Metatranscriptome | 310 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| JGI25381J37097_10003602 | F001901 | AGGA | MTRRKQPWGQKRGWIVPADGSPPQELPQQMVGQKLISWPGAMPEMQPAEPAKNLASKHYYHRYVLNPEGVSVYLPEGRDAESLPEAIKNEIRRQLKGQS* |
| JGI25381J37097_10003603 | F001681 | N/A | MKTLRLQRDPDGLFLWHPDYAPWIVGRRSREANPNDRAFFDPKAGEIVWSSRDGMKDYEMEELAARHLVGELVEMPPCESEQEVEAWFLERGFRVEWI* |
| JGI25381J37097_10003605 | F001545 | GAG | VVGVWHGTPYQVASLSSTADGVIVACGPAGKHTTYPKTGHRHTKDPSSDTSTWHERQVLSDATLAQPLQVIAFSGAKPPAWAKPHADRPSHDSFIFQVQTDGQVRLALVGVREADDAVIVVTKQSATAHRLFRRYAPNVLVWTVPADA* |
| JGI25381J37097_10003606 | F009972 | N/A | MLESSLRFRLVIARAADSTPGDVSGIVTRLHTDTELFWLLRIAQPVAAAPKVCRRSVATCLALLMLDDHLRVLRVLPMASVPHTPGTGVLRRDGVIQTYLGGVLPPRALADTKRIAELLIDGHSSYLDTLCQALSSDETCDGFEAVPADHELYDPEAAQYFAPPLTAWYRAGVLVHPVVPHTGTT* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |