NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI25381J37097_1001694

Scaffold JGI25381J37097_1001694


Overview

Basic Information
Taxon OID3300002557 Open in IMG/M
Scaffold IDJGI25381J37097_1001694 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 08_20_2013_1_20cm
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3563
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (71.43%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameAngelo Coastal Reserve, California, USA
CoordinatesLat. (o)39.718176Long. (o)-123.652732Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F025704Metagenome / Metatranscriptome200N
F029702Metagenome / Metatranscriptome187N
F058901Metagenome134N

Sequences

Protein IDFamilyRBSSequence
JGI25381J37097_10016941F029702GGAMKAHSIYVEQRMIYKCSCNREFEDIQKAESHLRNPPQEKVKSPRPKKPAARRREAKTVMVTAAEIPEPSGKRSWLSATPEGDESQDGS*
JGI25381J37097_10016942F025704GGGGGMGFLQELAGRVEEVAAAGGKFADAFVRTAGATVSSALVFMEREIGYAQKAAKKRPGEKTESRKGPSRR*
JGI25381J37097_10016947F058901GGAMKRPNWKAIGFLAFIALGAVSAALGCPFFRNPQNYMSAGGLVGYIQHLVSVHRKT*
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