Basic Information | |
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Taxon OID | 3300002557 Open in IMG/M |
Scaffold ID | JGI25381J37097_1009528 Open in IMG/M |
Source Dataset Name | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 08_20_2013_1_20cm |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 1719 |
Total Scaffold Genes | 4 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 4 (100.00%) |
Novel Protein Genes | 2 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (100.00%) |
Associated Families | 2 |
Taxonomy | |
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All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa |
Source Dataset Sampling Location | ||||||||
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Location Name | Angelo Coastal Reserve, California, USA | |||||||
Coordinates | Lat. (o) | 39.718176 | Long. (o) | -123.652732 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F046280 | Metagenome | 151 | N |
F091738 | Metagenome | 107 | N |
Protein ID | Family | RBS | Sequence |
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JGI25381J37097_10095282 | F091738 | GGCGG | VRVDRAASTQRKVELIKKRGQPLRRIGFRILGLGAVVSLGIDLVTWLLTKEGNPVRITLGLVLLVGAAAAVGVGFLIDRYDKRRLGI* |
JGI25381J37097_10095283 | F046280 | GAGG | MTKYGDFWIKMPKRLQTALRRCHTDQFLARSGGIADEFHKSVREYDGSSDDQFREAYVRATETMAPRLLVPFASMKPTDTTYRDHVEFFQRHLGCLREFGLSDGEIVDAVAAQVCLVLQSRGAAP* |
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