Scaffold JGI25385J37094_10013853

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold JGI25385J37094_10013853

Scaffold JGI25385J37094_10013853

Overview

Basic Information
Taxon OID	3300002558 Open in IMG/M
Scaffold ID	JGI25385J37094_10013853 Open in IMG/M
Source Dataset Name	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_27_2013_1_40cm
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	2890
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (50.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location Name	Angelo Coastal Reserve, California, USA
Coordinates	Lat. (^o)	39.718176	Long. (^o)	-123.652732	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F005023	Metagenome / Metatranscriptome	414	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI25385J37094_100138532	F005023	AGGGGG	MKREALTLGLVLLATPAAAQWLGEPTWNHPNAGSGFTISADYTKPNSDVGGGNAFGGRVALGAGVFTLTGGVSSWKSDLFSDRITTIGGTATFRLIGGSLIPVAVNLQLGGGHSMEITSTTTTVPVQTMGVAAVGVSVLLPTPVVSVEPYVSPGMRYHHYSNVAPGAPNHDTNFGWVIGGNLGFGPVGIHLAYDSEKFGDGKTHGVFGMGASIGLRPSGP*

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