Basic Information | |
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Taxon OID | 3300002558 Open in IMG/M |
Scaffold ID | JGI25385J37094_10032173 Open in IMG/M |
Source Dataset Name | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_27_2013_1_40cm |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 1846 |
Total Scaffold Genes | 3 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
Novel Protein Genes | 2 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (100.00%) |
Associated Families | 2 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa |
Source Dataset Sampling Location | ||||||||
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Location Name | Angelo Coastal Reserve, California, USA | |||||||
Coordinates | Lat. (o) | 39.718176 | Long. (o) | -123.652732 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F002331 | Metagenome / Metatranscriptome | 569 | Y |
F026139 | Metagenome / Metatranscriptome | 199 | Y |
Protein ID | Family | RBS | Sequence |
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JGI25385J37094_100321732 | F002331 | AGG | MRAMLTLGLAAVVATPAAAQWLGEPVWNSPKGGTGVTISGDYARPNSDYGSGNTWGGRASLGIGTLTFTAGVARWKPDLATEAFTSIGGNAAFRLIGGSLLPFSVNLQVGAARTDSANSTPAQTAVTGAVGFSVPLPTPGISIEPYFSPGIRYHSSAGTNTTQFGYVFGANLSFGLVGLHLAYDNERLKGGGNRGVFGVGAHLDLHLPLGM* |
JGI25385J37094_100321733 | F026139 | GAGG | MKRAALTLGLTLLATPAAAQWLGEPMWNDPTAGTGFTIYGDYSRPNSNAGGGTAFGGRVALGAGIFTLTGGVASWDPD |
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