NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI25385J37094_10033349

Scaffold JGI25385J37094_10033349


Overview

Basic Information
Taxon OID3300002558 Open in IMG/M
Scaffold IDJGI25385J37094_10033349 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_27_2013_1_40cm
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1807
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameAngelo Coastal Reserve, California, USA
CoordinatesLat. (o)39.718176Long. (o)-123.652732Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001681Metagenome / Metatranscriptome652Y
F001901Metagenome / Metatranscriptome620Y
F001906Metagenome / Metatranscriptome619Y

Sequences

Protein IDFamilyRBSSequence
JGI25385J37094_100333492F001681GGCGGLSDVGSMKTLRLQRDPDGLFLWHPDYAPWIVGRRSREANPNDRAFFDPNTGEIVWSSRDGMKDYEMDELAARHLVGELVEMPQCESEREVEAWLLERGFKVEWI*
JGI25385J37094_100333493F001901GAGGMTRKKQSWGQQRGWIVPADGSPPQELPQQMVGHKLISWPGTMPEKQSAEPAKYLASKDYYHRHVLNPEGVSVYVPEGRDAESLPESIKNEIRRQLKGLP*
JGI25385J37094_100333494F001906GAGMTIETNDFQSRLRVLVGLQGAVLTDEELSHTAERYPRCRGKGHWDVREYVRRTGVGAREYRVVRGSGIEDVYRSAERVRAAAIGTALNELESQETSGEAPGGSA*
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