NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI25385J37094_10039483

Scaffold JGI25385J37094_10039483


Overview

Basic Information
Taxon OID3300002558 Open in IMG/M
Scaffold IDJGI25385J37094_10039483 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_27_2013_1_40cm
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1630
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Nitrospirae → unclassified Nitrospirae → Nitrospirae bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameAngelo Coastal Reserve, California, USA
CoordinatesLat. (o)39.718176Long. (o)-123.652732Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F022846Metagenome212Y
F036167Metagenome / Metatranscriptome170N
F047595Metagenome149Y

Sequences

Protein IDFamilyRBSSequence
JGI25385J37094_100394832F036167GGAGMRRFTITDIVEGNGQSHPAFTHTATYPVLEVLLPGNGNLPGFLVADDQGRFHLIRMDHCHLGKIEAF*
JGI25385J37094_100394833F022846N/AMPXASPEEVGRELSDLAFGIVEQNWLEQYIGKVVNLTALDQLQLNVTEWELTYLILFAITNGCGTFSAADSERTTAILKAFHSTVLSHIAEQAGQEVADEHKKNLPARYRLYGPAIEGEDTNKPYKTPYRLLGEAAALQMLGKPLTDPHDADNFRETIKVIFTEVREATIKIMSFQQAQAIEGKA*
JGI25385J37094_100394834F047595AGGMDFDIGSNRYRNSSNSIEXDGMSHLLFEFNRRYXEMTLRGFVYDQKGNMVGKIAESSLAMNIQGEFEMRSEPSVVKVLRRETEEVLLEVKFLGKDHVQIHKARLYSIKGRPFEVTPKHWKIGDDAPRSGEDIDCNGNAVSLK*
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