NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI25384J37096_10118214

Scaffold JGI25384J37096_10118214


Overview

Basic Information
Taxon OID3300002561 Open in IMG/M
Scaffold IDJGI25384J37096_10118214 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_25_2013_1_40cm
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)894
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameAngelo Coastal Reserve, California, USA
CoordinatesLat. (o)39.718176Long. (o)-123.652732Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007948Metagenome / Metatranscriptome342Y
F030255Metagenome / Metatranscriptome186Y

Sequences

Protein IDFamilyRBSSequence
JGI25384J37096_101182141F030255GAGGMAQITASIVLAIAVGVAPLAGQTALSIYSDGRVVVRRTLPQALQKGRNAITLRLDELDGATLFSPDTAVALVSAVVHPPTAQDAALAAAVGQTLAFIRPRADGGADTVRASVFRTNPPQYRLPDGRFLLSQPGEPLFPASHPVRT
JGI25384J37096_101182142F007948AGGMGRLVAAVTTLLLAGYLTLALRSVAPASQTTARTVGAVAAVAWYLLTFRIVQRFAFEWLKSRRP*
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