NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI25382J37095_10015499

Scaffold JGI25382J37095_10015499


Overview

Basic Information
Taxon OID3300002562 Open in IMG/M
Scaffold IDJGI25382J37095_10015499 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 08_20_2013_1_40cm
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2911
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameAngelo Coastal Reserve, California, USA
CoordinatesLat. (o)39.718176Long. (o)-123.652732Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F019109Metagenome / Metatranscriptome231N
F026521Metagenome / Metatranscriptome197N

Sequences

Protein IDFamilyRBSSequence
JGI25382J37095_100154991F019109AGGAMRGSVLGLPLWLILAVCVVPPIAYSLSRAAAVPVELILPTAVAMEVVFLTQTVQQALRRAEVRRHFGFALWELHQELSQHLESLDRRMTLVRQGVNSEPNLDSLRTWASSVDAFPVDAWDRFLAIGGLHRLLDSAPDQVASNLYRYYHGVGTFNNEAALRER
JGI25382J37095_100154992F026521GGAMDDPEVEEVGVDQVFDVRMKRAITVLQALLDYYRVKKVPPIATVRRIDIEDAALAMVTGEFXLTDVALRLDALRYDFNSDGELLADEDGFPVE*
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