NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold C688J35102_119376356

Scaffold C688J35102_119376356


Overview

Basic Information
Taxon OID3300002568 Open in IMG/M
Scaffold IDC688J35102_119376356 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from Hopland, California, USA - 2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)683
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Grasslands → Soil → Soil Microbial Communities From Mediterranean Grasslands, California

Source Dataset Sampling Location
Location NameHopland, California
CoordinatesLat. (o)38.99297339Long. (o)-123.0674491Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000556Metagenome / Metatranscriptome1027Y
F092626Metagenome / Metatranscriptome107Y
F101232Metagenome / Metatranscriptome102N

Sequences

Protein IDFamilyRBSSequence
C688J35102_1193763561F092626N/ADEDDLDWFVTALDETVSRAEKMPRALVRFALHAARAGRTPRKRLARA*
C688J35102_1193763562F101232GGAGGMTIDLRAVRAALLLAAAILFFAGAGLGIEHERKTLIVWGVGFGLVTLDRLIVLAIETFWVRG*
C688J35102_1193763563F000556N/APGVEVRVNFGVFAGRGATPAEIDDLAKALLPKVGEVAIVAEERHEIGEDSEASLNQVRIEVSPEHLPDDGHELDILCGRLVEAAEQWATTCIAERHADVAEP*
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