NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold C688J35102_120964144

Scaffold C688J35102_120964144


Overview

Basic Information
Taxon OID3300002568 Open in IMG/M
Scaffold IDC688J35102_120964144 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from Hopland, California, USA - 2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3362
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Grasslands → Soil → Soil Microbial Communities From Mediterranean Grasslands, California

Source Dataset Sampling Location
Location NameHopland, California
CoordinatesLat. (o)38.99297339Long. (o)-123.0674491Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F027261Metagenome / Metatranscriptome195Y
F053320Metagenome / Metatranscriptome141Y

Sequences

Protein IDFamilyRBSSequence
C688J35102_1209641441F053320AGGAGMARARLALLTAAASLLLAGGASAKVYIEWRPRMSLMGGYDDNVQLNGAGGDGFGQAVPGLKLDIFGDHNLHVDVDCQAGIARLAHPEEFGISSGAFAANETCALGTRVHLSTRDKLQLRTSATYAQDPFSIAGLGLLLRPGQTQIFVAKFQGLIEHALTGHSHFDYGLDGQALAFGAGDPGNGFVLAPQARYAWKTSARGTWDVGMREQLFFAMGADPNPLAPKGSPGGLLDQAHSALLGYTYALAPWANL
C688J35102_1209641444F027261GGAMFRTIAAAAIVFAFAAFGLRQSALAGPLEEPLLLLFMGTLFLVVGKVFSSSKKSDAPVPATQLVERRA*
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