NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI24136J36422_10066326

Scaffold JGI24136J36422_10066326


Overview

Basic Information
Taxon OID3300002569 Open in IMG/M
Scaffold IDJGI24136J36422_10066326 Open in IMG/M
Source Dataset NameArctic peat soil from Barrow, Alaska, USA - Barrow Graham LP Ref core NGADG0011-212
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1027
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil → Arctic Peat Soil Microbial Communities From The Barrow Environmental Observatory Site, Barrow, Alaska, Usa

Source Dataset Sampling Location
Location NameBarrow Environmental Observatory site, Barrow, Alaska
CoordinatesLat. (o)71.29053Long. (o)-156.788654Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F091926Metagenome107Y

Sequences

Protein IDFamilyRBSSequence
JGI24136J36422_100663262F091926N/AVPGKAALALVAFLFSTLLVLPSSGLGGSRVPPPTLYRLHTFKLNLDGDAARERVQVYDIRQGTLMTPTTYFRVGDRHKAAWANIQLLRVFQSPGSSESGLVQAWVRDLNGDSRAEIAVRDYATASVGETLTLYRQRAAHSLRFSKLQTIVGDQIVIAGSGAAAGWKVLIKANHARDGLDHHELWSWAPAQKKWACKTDCVPR*
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