Scaffold draft_11046882

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold draft_11046882

Scaffold draft_11046882

Overview

Basic Information
Taxon OID	3300002703 Open in IMG/M
Scaffold ID	draft_11046882 Open in IMG/M
Source Dataset Name	Wastewater microbial communities from Syncrude, Ft. McMurray, Alberta - Microbes from Oil sands tailings Tailings Pond 5 - 2012TP5
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	McGill University
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1881
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae → unclassified Syntrophaceae → Syntrophaceae bacterium PtaB.Bin038	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Wastewater → Industrial Wastewater → Petrochemical → Unclassified → Hydrocarbon Resource Environments → Hydrocarbon Resource Environments Microbial Communities From Canada And Usa

Source Dataset Sampling Location
Location Name	Suncor Tailings Pond 6, Northern Alberta, Canada
Coordinates	Lat. (^o)	57.02	Long. (^o)	-111.55	Alt. (m)		Depth (m)	5
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F022683	Metagenome / Metatranscriptome	213	N
F041288	Metagenome / Metatranscriptome	160	Y

Sequences

Protein ID	Family	RBS	Sequence
draft_110468821	F022683	GGAGG	MASDMSDNMKPAADFYTRWSKDSLDMLSKGMTMYNKMSRGWMDVAEGSSGDKPDDMLKKWGDAFSGSYNDLFEMYMQPFKKLVAGQAPGKEAWEDAFAKWQKMFTSMPAGSGPTAAPDEFVNFSKNWFEGYAKVWQTWLESVQKMGDACKTAVGEGEKPGAAMSDVSEISDRFM
draft_110468822	F041288	AGGAGG	MAKQKIHDRISPTSAAVLIVSAALLMSVLAFASTYLMGKQLPTEQTLKSSVGNEKFNTVRFETYGGQPENRLIGYFLYKEGIRVKSDGPQLEPVGKLSLNEVFADHARVAKAKFYNQSGKLMIREIIRENSVIGYAVSDPMMEITLWDATTDPLNISLELRYKDLQAKGDRYYGGPR*

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