NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI25136J39404_1000535

Scaffold JGI25136J39404_1000535


Overview

Basic Information
Taxon OID3300002760 Open in IMG/M
Scaffold IDJGI25136J39404_1000535 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - ETNP_6_1000
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5902
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (63.64%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)18.92Long. (o)-104.89Alt. (m)Depth (m)1000
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008596Metagenome331N
F008691Metagenome / Metatranscriptome329Y
F040141Metagenome162Y
F041246Metagenome160Y

Sequences

Protein IDFamilyRBSSequence
JGI25136J39404_100053511F008596GGAGMSGAWDIATATSIGTGVSKTQINGGNNLTKPTQAVNLVELVPYISSSGAMTAGESLAVTLEVDSYSVDLLPKRIIVPPIQSGLGTTISQVNPLLEAYECGTGLQEGATSQFQIYGTNQIAPTVATNLACALHYSTTPPNRPEHFYHKPDDETNFTTATTTTGDSFTINDGMWLEDMYVSVFTAVYTVSXSLTGYGSFTSNDFGNSLPLKIPMXPGXASLGATGTQGILALASYHNTHMPMKTSCKISTA
JGI25136J39404_10005352F040141N/AMRCLSHEFIFKTDKCQKGSYLFMQKTRICYYCMRYLKKNYGITESDLLKDKFYKKFISTDKDFLQTIHNF*
JGI25136J39404_10005353F041246GAGMKYVIGITKRFSYTKSENHTKKGRKHFFCYEYSMESGEFKRIRISTIKAIYYKITFIFGLKSKKVTNVYCKDCRKSYDCLVNFWDKNLDCPYC*
JGI25136J39404_10005358F008691N/AMASLAGYNVKEEATEVKKNLFENRDTFVMLVVAGVVGGAITRFVIPKSVTEGSVFSRFKSWFGYDQEEYEEEE*
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