NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI25136J39404_1004944

Scaffold JGI25136J39404_1004944


Overview

Basic Information
Taxon OID3300002760 Open in IMG/M
Scaffold IDJGI25136J39404_1004944 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - ETNP_6_1000
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2268
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (33.33%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)18.92Long. (o)-104.89Alt. (m)Depth (m)1000
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007550Metagenome / Metatranscriptome349Y
F011494Metagenome / Metatranscriptome290Y
F047104Metagenome / Metatranscriptome150Y
F081424Metagenome114N

Sequences

Protein IDFamilyRBSSequence
JGI25136J39404_10049441F011494N/AMRKYSVVDEEGVVQEFVQSVGEHDHAALNDAIELAGRAGEDVVEHLADGGRVVVWELAGEEPWEGEDRFADGDALASAGFGTDEDYGCFGDEALCGE*
JGI25136J39404_10049442F081424GAGMISCEEVFEADANARAEFDVVCDEWLNEAVVAQDEEICWCKSFESCSLCFGKK*
JGI25136J39404_10049444F047104GAGMRDMYKKNQMTLKEIQRFMDAKRKREAKLHLNTFTLNGNTYEVNNDPAHQREQLEGYCGNNPK*
JGI25136J39404_10049446F007550N/AMRNRMKKIISLLLLVGAVSANAASLELIVKKQKTLPNGNAYGLESGIYFELTDLEPFVMYKLQYSEDLKKWTDMVHLGTYQMAMTSPYYTWKELPPSKCFFRIVVA*
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