NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI25136J39404_1005780

Scaffold JGI25136J39404_1005780


Overview

Basic Information
Taxon OID3300002760 Open in IMG/M
Scaffold IDJGI25136J39404_1005780 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - ETNP_6_1000
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2124
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Pacearchaeota → Candidatus Pacearchaeota archaeon(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)18.92Long. (o)-104.89Alt. (m)Depth (m)1000
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F047715Metagenome149N
F064782Metagenome / Metatranscriptome128N
F095325Metagenome105N

Sequences

Protein IDFamilyRBSSequence
JGI25136J39404_10057802F047715N/AMLYGKNGIVELDMYIDYCPTCTTDKDETVYLKSYGEAYKDIMSSTVKMEWFMKCPRCEQLFDGGDLYIEREHGLKSRSGTKEY*
JGI25136J39404_10057803F064782GAGMDLKAEVVLKNIRKEIKQIRDRNRNVKNHPYAENTMVMIGLMRAIIIVEGLRDEEMEKLIDWKAERKRIVSN*
JGI25136J39404_10057805F095325AGGAMNEEQQPDWDNINRGKVRHFFALELYKQGGKLTDTEIGTIEMYVEYVMSGADFREVIKEQSALALMSRKECEDIITGRLRDIDSVTAEEHTRAIVHLEARGLKDNDLKPVLEALDAGKIKQDNLKASIDKIDNIKSEYDKE*
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