NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI25136J39404_1021329

Scaffold JGI25136J39404_1021329


Overview

Basic Information
Taxon OID3300002760 Open in IMG/M
Scaffold IDJGI25136J39404_1021329 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - ETNP_6_1000
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1175
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)18.92Long. (o)-104.89Alt. (m)Depth (m)1000
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003617Metagenome / Metatranscriptome477Y
F014859Metagenome259N
F060030Metagenome133N

Sequences

Protein IDFamilyRBSSequence
JGI25136J39404_10213291F060030AGGMVLQKLLIEEGIKRGLKESQKYSVSVLGYDFIGLVSRLAVFFVMAFLINSYFIATIQGGIWLNSLGGFFNLKFPSTLPEWLTQLFTTGYKGFTFWNLVTTISVLIVVVE
JGI25136J39404_10213292F014859GAGLVNELIPPEIIPIIWFAGITISVYFFFRKFSDVIKARITHTARKNKTVDVEETGNQIDNLINNAPRILDEVNKEIAAQREKGVTDEQMKGLLQKKQLLELGTSIPPEVYNIVAKPLVKKLIGFVGKI*
JGI25136J39404_10213293F003617N/ATYTFLPDMTAIIYALHLNIPAALTCSAYTSGGLNVGALHIKITERSTDNRLLYENTFQSGAATLSATGTSLHWFTRDIVETIQVTKGNPIDILVELVTVVTGTNTRQEGYVPVAPYLKTAVMKRFTPAGIALHLHADLSHADGVLKYKKTRVSMLGQ*
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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