NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI25136J39404_1067713

Scaffold JGI25136J39404_1067713


Overview

Basic Information
Taxon OID3300002760 Open in IMG/M
Scaffold IDJGI25136J39404_1067713 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - ETNP_6_1000
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)665
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)18.92Long. (o)-104.89Alt. (m)Depth (m)1000
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F038477Metagenome166Y
F043987Metagenome / Metatranscriptome155Y

Sequences

Protein IDFamilyRBSSequence
JGI25136J39404_10677131F038477GAGGMPVHPHVSGGLKKVFDFFKANEIPRDILISVGSAITGAFLFDRILRRDQDEEDEDQ*
JGI25136J39404_10677132F043987N/AMLIWVIVTNKNFLKIPKDELWILTKREKKGLLTELKRRVEVLS*

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