Scaffold B570J40625

Basic Information
Taxon OID	3300002835 Open in IMG/M
Scaffold ID	B570J40625_100000092 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Mendota, WI - (Lake Mendota Combined Ray assembly, ASSEMBLY_DATE=20140605)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300002835 Open in IMG/M

Scaffold ID

B570J40625_100000092 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Mendota, WI - (Lake Mendota Combined Ray assembly, ASSEMBLY_DATE=20140605)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	118514
Total Scaffold Genes	184 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	134 (72.83%)
Novel Protein Genes	8 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	7 (87.50%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

118514

Total Scaffold Genes

184 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

134 (72.83%)

Novel Protein Genes

8 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

7 (87.50%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales	(Source: IMG-VR)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales

(Source: IMG-VR)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location Name	Lake Mendota, Madison, Wisconsin, USA
Coordinates	Lat. (^o)	43.099444	Long. (^o)	-89.404444	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Mendota, Madison, Wisconsin, USA

Coordinates

Lat. (^o)

43.099444

Long. (^o)

-89.404444

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000264	Metagenome / Metatranscriptome	1424	Y
F000684	Metagenome / Metatranscriptome	938	Y
F005092	Metagenome / Metatranscriptome	412	Y
F014250	Metagenome / Metatranscriptome	264	Y
F071231	Metagenome / Metatranscriptome	122	N
F087107	Metagenome / Metatranscriptome	110	N
F093845	Metagenome / Metatranscriptome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
B570J40625_100000092164	F014250	GAGG	MITTELAPHLQKLVDLGESGTDILHGELKNLMYEAEKEYNAAVEQEEYTEEAMDSMERKYWEGQMDALSWVYALTYQLSFAISDRTKKNA*
B570J40625_10000009217	F093845	GGA	MINVTLTTTTGSTKGMSFDTKGDVLVFIEKMTHALPIGTVLNIDAPLIGIHSGWIQGKKINN*
B570J40625_100000092174	F000684	AGG	MTLGGYTYQIGDLFTTSKTGITGRIASFEPMSNKLTRVSLVLANGSRRLAMVKTSK*
B570J40625_100000092181	F005092	AGGA	MNRKKEKMDKLDYALSAIRSCFICEGRGHLYWGNGEDYDTETCECNTYDIILDDDGDVIWDNGLLSEPELAIFGSKEAY*
B570J40625_10000009225	F087107	N/A	LVNFLYHVRFVLYGIIFLLANTLVCPIPTDPGISQFLWYNHSMPIHSSLAFGADPVTMQWSVVRGDTGTLRVEFYEDNEVDYYDTTGWIFRATAYDQSGNVLDALDCEPGDGFVDITAYPSVTKNWGLKYASVVAQLPFDLQVIIPQEIEDTVWTPVIGTIQVLGDVTPGGTL*
B570J40625_1000000925	F005092	AGGA	MNRKKEKMDKLDYALSAIRSCFICEGRGHLYWGNGEDYDTETCECNTYDIILDDDGDVIWDNGLLSEPELAIFGSKEAN*
B570J40625_1000000927	F071231	GAG	MMTRKDYVKTAEILSNYFATSVFDEQGEMLFADLVDEFSLMFESDNERFDANKFALACYKKIEVDA*
B570J40625_10000009294	F000264	AGG	LTNNAMAAKLYTSEVFMRKRYLMDKKTPDEIAKECGVSVETIYVYLAKFGLRKSKR*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold B570J40625_100000092

Overview

Ecosystem & Geography

Associated Families

Sequences