Scaffold B570J40625

Basic Information
Taxon OID	3300002835 Open in IMG/M
Scaffold ID	B570J40625_100000790 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Mendota, WI - (Lake Mendota Combined Ray assembly, ASSEMBLY_DATE=20140605)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300002835 Open in IMG/M

Scaffold ID

B570J40625_100000790 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Mendota, WI - (Lake Mendota Combined Ray assembly, ASSEMBLY_DATE=20140605)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	55857
Total Scaffold Genes	72 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	56 (77.78%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (60.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

55857

Total Scaffold Genes

72 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

56 (77.78%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (60.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location Name	Lake Mendota, Madison, Wisconsin, USA
Coordinates	Lat. (^o)	43.099444	Long. (^o)	-89.404444	Alt. (m)	Depth (m)
Location on Map

Zoom:	Powered by OpenStreetMap^©

Source Dataset Sampling Location

Location Name

Lake Mendota, Madison, Wisconsin, USA

Coordinates

Lat. (^o)

43.099444

Long. (^o)

-89.404444

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F016938	Metagenome / Metatranscriptome	243	Y
F022591	Metagenome / Metatranscriptome	213	Y
F045570	Metagenome / Metatranscriptome	152	Y
F056351	Metagenome	137	Y
F061574	Metagenome	131	Y

Sequences

Protein ID	Family	RBS	Sequence
B570J40625_1000007901	F045570	GGAG	MATRRNFFKYLGLAGGVAGGGIVAAAAVLPDADKCKAIEEIKAAGYNGKLNIGTEYGELASPDGTISCGPKFVPGTQKHVTASMTVGPDGEMYLMTNGKWRRIVTE*
B570J40625_10000079010	F022591	N/A	MKSENTIVKIGDVVKSLDFVGINDCYYVGLVVGISKMDGTFRAKTIKRVWQGQLDKKFPSDFFTAPLPGNSFFDDMAEEKGVDSRVQVVA*
B570J40625_10000079012	F016938	AGGAG	MRKQTETLLSEAIDLVNGVDHVLANTMTQYDLSAKDCYNMAEKLERACHALLVVGDRKTQQDLNKIPMGEGVPF*
B570J40625_10000079037	F056351	N/A	MQLKKIEKKVYALAETWVGEKHIPSMIRQLNKAFKSYIVCFSSERFDDEYYPDHNVIVNGHYCVRISDIIPEHIYICLNFPEDSKKAIITEEGARNLAIKIIRAIHHEYRHKHQQKQRPLLLQKEYKPKPKQNKMKAMYYGNPDELDAHAYETQAEKFDINKLRKAHKIGWRECEAIFMYRKHFRKQDPKVWKKFLKKVYRLNAN*
B570J40625_10000079044	F061574	GGAG	MFSFKDYIPLLTEEKKPARGILHLPHPSESAFHNRRGAVGSTLSKIQNVINGKAPLTRKIDDRMSFQAIRDEQGRIGVKYKGQGATYNFSPEDIKKQHSEKPYIAGPLLNLHKHIHKILPEGPGEYQGGYLSSLNDRTEEDGKIGHKPNTIRYSVDKNSTEGKKLAKAPISVVVHSRIDASGKASPLEAGALKEHPDVHVMSHVVSDEERKIPAASKRKALEHIAAAKKLAKDQSTNHHEGHEETLLRYANSTVDTGEKPSAKGYTKFLQQYHQKKIDKVKTDKAKAQKTETMRAAINHVNDNLDKFDKTFEIHHHIHQATQAVANTLSKTAHGGYSHHIDGQEAAGEGFVSGGMKFVPRAFTEANRKRSAEFKAAKEQKSVL*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold B570J40625_100000790

Overview

Ecosystem & Geography

Associated Families

Sequences