NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold B570J40625_100012581

Scaffold B570J40625_100012581


Overview

Basic Information
Taxon OID3300002835 Open in IMG/M
Scaffold IDB570J40625_100012581 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, WI - (Lake Mendota Combined Ray assembly, ASSEMBLY_DATE=20140605)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)15157
Total Scaffold Genes41 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)33 (80.49%)
Novel Protein Genes10 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)9 (90.00%)
Associated Families10

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameLake Mendota, Madison, Wisconsin, USA
CoordinatesLat. (o)43.099444Long. (o)-89.404444Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002489Metagenome / Metatranscriptome554Y
F003643Metagenome / Metatranscriptome475N
F003663Metagenome / Metatranscriptome474Y
F003690Metagenome / Metatranscriptome473Y
F007363Metagenome / Metatranscriptome352Y
F008132Metagenome / Metatranscriptome338Y
F008357Metagenome / Metatranscriptome334Y
F014129Metagenome / Metatranscriptome265Y
F044483Metagenome / Metatranscriptome154Y
F051704Metagenome / Metatranscriptome143Y

Sequences

Protein IDFamilyRBSSequence
B570J40625_10001258110F002489GGAGMTTENKEQPQNLEDNLPMVNYIMMHRIYDLLTLISNKLVGPEDTSKMVEYHSQGYLLGPSPSYTPGDEDESK*
B570J40625_10001258112F044483AGGMVNKLYIDQIAYKMNRAKKNGYEDTTKSSEALNWMVEKIESYLNKCLNVENGNCYISWKHDDCRVLMEILYDLTKDEKYTEKPWKADPNKKLLWD*
B570J40625_10001258120F051704N/AMHDHNNITLATGSGITEMQLMWLIMGVMAIHHTWMWWKMRSKRCTCKK*
B570J40625_10001258124F008132GAGGMMTKWDTIQADVADAYRHLDDVEEIEQEDEEDFFGFAKAIEIDHLTDEQLDEVFNMFGDK
B570J40625_10001258125F003690GGAGMIPSGFELIISNDYGLEFDSFFGAIYLPWHTIIITALALIAYKIYKRKKNK*
B570J40625_10001258127F014129AGGTGGMTTLSIREITLENVSADEANLIVCAFCSDYASEMFCGNCNEYKGLMTLGEWLAYTQESWVM*
B570J40625_10001258129F007363GGAMRGYSIVDLLVDQYYSPTSMRRRFNGGIINFAEKRENVYPPEGYEAFSIRYRPTGSFTDEWATVAVRISDY*
B570J40625_1000125813F008357AGGAGMAGQKNWEVDQNTTFSFIVEYKDPNDIPISLVGATAKMQVRDTKGGSKLAFTLTSPSTGGITIDAALGKLTIKMTPTQTNKLFYPKSSYDLMVIDSNGNKIKLLEGFLTLNRSVTI*
B570J40625_10001258139F003663AGGTGGMLSTAIDLLDATKNSIFDEDIMGLAGELHTRRNELSDEIFAKYLYMYSSALSAKVADSITKVLLTEKEMSDLCATIDEMENLSETILEENE*
B570J40625_1000125814F003643AGGAGGLSKTKEDLNNDGKVTMQEKILAALASYGRHFLGAAIALYMTGNTDPGDLIKGGIAACLPVILKALNPNESSFGFTKK*
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