Scaffold B570J40625

Basic Information
Taxon OID	3300002835 Open in IMG/M
Scaffold ID	B570J40625_100015630 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Mendota, WI - (Lake Mendota Combined Ray assembly, ASSEMBLY_DATE=20140605)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300002835 Open in IMG/M

Scaffold ID

B570J40625_100015630 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Mendota, WI - (Lake Mendota Combined Ray assembly, ASSEMBLY_DATE=20140605)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	13272
Total Scaffold Genes	34 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	31 (91.18%)
Novel Protein Genes	8 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	8 (100.00%)
Associated Families	8

Scaffold Components

Scaffold Length (bps)

13272

Total Scaffold Genes

34 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

31 (91.18%)

Novel Protein Genes

8 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

8 (100.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location Name	Lake Mendota, Madison, Wisconsin, USA
Coordinates	Lat. (^o)	43.099444	Long. (^o)	-89.404444	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Mendota, Madison, Wisconsin, USA

Coordinates

Lat. (^o)

43.099444

Long. (^o)

-89.404444

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002245	Metagenome / Metatranscriptome	578	Y
F002598	Metagenome / Metatranscriptome	544	Y
F004840	Metagenome / Metatranscriptome	421	Y
F013184	Metagenome / Metatranscriptome	273	Y
F017134	Metagenome / Metatranscriptome	242	Y
F017829	Metagenome / Metatranscriptome	238	Y
F020168	Metagenome / Metatranscriptome	225	Y
F050376	Metagenome / Metatranscriptome	145	Y

Sequences

Protein ID	Family	RBS	Sequence
B570J40625_1000156301	F050376	AGG	MTLDEYRAYVEATRKESLLKAIATMSEANDKMSSLFNTKEAD*
B570J40625_10001563011	F020168	GAG	MYDILGSTIAIILIAFLCSPIVLAIYMWNGAKFDGDNDGQEDLPNRWDKE*
B570J40625_10001563012	F002245	AGG	MANLMKVPHTVEFEAIIDLDKIPANLLPRLIALDTYSVTKMCKEATLHALGMSNALPLANENNTWAEITIKGDN*
B570J40625_10001563016	F017829	AGG	MANRFRVEIYDANKSNDITIYSDQGVDKEYLTELVFSNIKNFSGKINAYVFDNVKKKKTTAMFLDEETVEFNKNLIKSATGIELGS*
B570J40625_10001563026	F013184	GGAG	MNRYGFVIKLEGAVMANNEKEAHEKINLHLNDLGEVDSARYDLNWPDVSWDMEYELL*
B570J40625_1000156305	F002598	AGAAGG	MATKLYTIESLLVGQNYRSRNRHFAGEIVSAKPRPEIWYGDKTEAFLIEIRTGGLRNKFATIAVKVGE*
B570J40625_1000156306	F004840	AGGA	MYKVTCQYDYEESPHWSQTYENEFGAWESFFRFTDWGMANEYSTVNIYTPSLKCYTKVFYRNGEVKVKI*
B570J40625_1000156309	F017134	GAGG	MELFIVSCLNYEICGAQETFETESEYEVYGDDYICAECYASEEMEFFETIGWADSDALASAGHGMDEDY*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold B570J40625_100015630

Overview

Ecosystem & Geography

Associated Families

Sequences