Scaffold B570J40625

Basic Information
Taxon OID	3300002835 Open in IMG/M
Scaffold ID	B570J40625_100016459 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Mendota, WI - (Lake Mendota Combined Ray assembly, ASSEMBLY_DATE=20140605)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300002835 Open in IMG/M

Scaffold ID

B570J40625_100016459 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Mendota, WI - (Lake Mendota Combined Ray assembly, ASSEMBLY_DATE=20140605)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	12866
Total Scaffold Genes	33 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (9.09%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

12866

Total Scaffold Genes

33 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

3 (9.09%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

0 (0.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location Name	Lake Mendota, Madison, Wisconsin, USA
Coordinates	Lat. (^o)	43.099444	Long. (^o)	-89.404444	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Mendota, Madison, Wisconsin, USA

Coordinates

Lat. (^o)

43.099444

Long. (^o)

-89.404444

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002303	Metagenome / Metatranscriptome	573	Y
F005090	Metagenome / Metatranscriptome	412	N
F007751	Metagenome / Metatranscriptome	345	Y
F010084	Metagenome	308	Y
F011075	Metagenome / Metatranscriptome	295	Y
F027843	Metagenome	193	Y
F028510	Metagenome	191	Y

Sequences

Protein ID	Family	RBS	Sequence
B570J40625_10001645920	F007751	N/A	MNKIEELKSVIGKDVSQNFSPTCRARLVKVNKVNSTFESVPSPYNKFPKPEFVGVKYKVPNWIAWNSFFY*
B570J40625_10001645924	F027843	N/A	MQIEFLNANGSLWIVKRKFKADSWFVQGIFANKFTVEEVCERYHVEKLLRGPDDTHYLVNEVPEAEIVID*
B570J40625_10001645928	F002303	N/A	MDIREQCRERAIEFAKEWNCDNVSNHILDIMVSIMCTRDKSSYAGGGFVEAVVSNNLYLAMSRADTDCRNNIFLLTMCKANCFIQN*
B570J40625_10001645929	F005090	N/A	MKKKIKFLWCGVNFELPAECLRTTDYWGKTLDNPYISIGRKECPAIAKQFMKAKYPHLLVWGSSETFANGNSATINVCNADGSDLNVASKEWNDIYTFVRQMSAGRYDGWSESYEYGEPGKSDNGTKLDFGTKYLHIENKAPFGTWPDVVRMLKAMMAGEYVWGPISLDKAIEKVRGYKITEPTIKKALELI*
B570J40625_10001645931	F011075	N/A	MSNFETHLGIIVGSHLNDAMIEVSINPQLAKKRLKFVKALTFFNEDLTKGVTDDYCDWLWNELFENQRWGGPYIKGTNYETKK*
B570J40625_10001645933	F010084	N/A	VSPIDGIGVFAIKDIKKDEQVFPIWEGESFMYIIPNERLSDIPNAVLELLDMYFINDDLGFKIIRLFKGMNFLFHGTSFCNSAYPSKENTNVDITGIALRDIKAGEEILEWYTQNLNLEN
B570J40625_1000164597	F028510	N/A	MGNVFKQRTYECKCGAITKEYGWDNELEKTKVKCNDCSKLLNRKNLVKVNWAASIRTPTKNR*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold B570J40625_100016459

Overview

Ecosystem & Geography

Associated Families

Sequences