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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300002835 Open in IMG/M |
| Scaffold ID | B570J40625_100019566 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Lake Mendota, WI - (Lake Mendota Combined Ray assembly, ASSEMBLY_DATE=20140605) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 11531 |
| Total Scaffold Genes | 16 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 4 (25.00%) |
| Novel Protein Genes | 7 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (28.57%) |
| Associated Families | 7 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Lake Mendota, Madison, Wisconsin, USA | |||||||
| Coordinates | Lat. (o) | 43.099444 | Long. (o) | -89.404444 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F002708 | Metagenome / Metatranscriptome | 535 | N |
| F011063 | Metagenome / Metatranscriptome | 295 | Y |
| F013293 | Metagenome / Metatranscriptome | 272 | N |
| F015718 | Metagenome / Metatranscriptome | 252 | Y |
| F018350 | Metagenome / Metatranscriptome | 235 | Y |
| F048122 | Metagenome | 148 | N |
| F081250 | Metagenome | 114 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| B570J40625_1000195661 | F011063 | N/A | VIKLKDILLEGKPPTIFVPRRLEDRVERMIKNYIHNGYKGNLSLSGLNLTVLPEILKDID |
| B570J40625_1000195662 | F015718 | AGGA | VKIVPIIRDGKIVMGDINEQYPVTNVMWQYMDDMTLGEYLASLGVDYKSYGFIKGFPRSFYLRIGFYEPGYVITTNSHLYDSLVTVRDNDPWHRKFKVFPVGSNLYGNDVYYYFSLMAKGLSSYGNDIYNCYVHVTTVNGKSVYCVDVLN* |
| B570J40625_1000195663 | F081250 | N/A | MPRVAKENALSSNAKDVWDMYAKGGKLDNEKIAKTLGINVDTVKKIIDICEKKFLENKTVIQIANEMKLTDYTIMQVLNNAIPDWKRTRDVNFTKDAEEIYNLHKQEKNPDEIVNLINQNRERHLQIKLDKVNLVLKIVDIATKQMENDGQMNAHEIERQINRDKDINVIIRLIKKLGIGKIKYKHKFTEEQDAFILFNYLQKIGLSELTRKFNEKFSTESKKLNIGVGSIYGRLKDTILKSNFESEISEYALNLIRDYKIEYFSTVNIEDPKTKELLKNYTPPETIKGKDKTGTGTNRDMSAHLGTVQPNFNTMVTNLRNAHTIR* |
| B570J40625_1000195665 | F048122 | AGGA | MLYMNKQVLMEVKDKLKRMIREVLLEENWTNWSLIIDKSGKIHDCGMDHGGWLMYNWKPKMDPIYRINVQSHGDDEQLLYVDERANSGILRKKLVAFAEDNGIKSIVWTNSVTNRGRLEQL* |
| B570J40625_1000195666 | F018350 | N/A | MTFKEIINKYPIVNTDWECNHNHIGSMSHRIMAVTGIDSYNGMKQFHQYLGISGYFSRTRVDDGSGVIFNSDPWMREFKMYYTRGGIKNGIYECKRIDGVNGGNDVYIMVTSVEGSRVWCMDVFER* |
| B570J40625_1000195668 | F013293 | N/A | MIDTASDLTNLITVNFTETMTPEIELTEAELEAMDDIRVQDELSATVAELPVTTEEQLARYNEKMDFLASIRAEIPALNVVEETTEESYAVPSGRYDYVYSMGTI* |
| B570J40625_1000195669 | F002708 | N/A | MKKLQKEFTANYDKVGNNKFIQIKKENGVAIYERQNMDGSHRSYEVFAVKVVEKGTPLPGGNKVQETYEQYPGCAAFGKTAYDCKTIDTAEKRFDELVKKVKDSADAKEQAAKTGIPVKRGRKASAKMNVKMPLNKGSKFTISMLTTYTGIDTVYIRKAVKEWLNDGVISINGSVKNETGRGKPSIEYVVV* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |