NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold B570J40625_100023025

Scaffold B570J40625_100023025


Overview

Basic Information
Taxon OID3300002835 Open in IMG/M
Scaffold IDB570J40625_100023025 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, WI - (Lake Mendota Combined Ray assembly, ASSEMBLY_DATE=20140605)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)10344
Total Scaffold Genes26 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (42.31%)
Novel Protein Genes10 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (40.00%)
Associated Families10

Taxonomy
All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameLake Mendota, Madison, Wisconsin, USA
CoordinatesLat. (o)43.099444Long. (o)-89.404444Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007859Metagenome / Metatranscriptome343Y
F008688Metagenome / Metatranscriptome329N
F009135Metagenome / Metatranscriptome322Y
F010081Metagenome / Metatranscriptome308Y
F010397Metagenome / Metatranscriptome304Y
F013524Metagenome / Metatranscriptome270Y
F019476Metagenome / Metatranscriptome229N
F024047Metagenome / Metatranscriptome207N
F090299Metagenome / Metatranscriptome108N
F101154Metagenome / Metatranscriptome102N

Sequences

Protein IDFamilyRBSSequence
B570J40625_10002302510F010081N/AMQDKIDSIIKKHCLEMQEVDKTKSIPMIVKQLDGIVYTMYRELYGLRDIRSDNYYLNSFTADDKKGHCC*
B570J40625_10002302511F010397N/AMIRRDIVVKMNVNEFERTKPVITMQKINDLIKLIDEERVKTEILYRDRVRSLDDISILLKETKKSFVKGE*
B570J40625_10002302517F090299N/AMKKVIVSKVEYEFIIFSLEELYTLSSDETISDKWLSKLEPTKKLFDLELEFYNIRNDGQTPTKKEMVKWLLAKIKNKSLDL*
B570J40625_10002302522F101154AGAAGMRKSRVDKIKLLNEENEVDVTSDMLNSYRSNTKKRVTKKGLEKYFNNLILLMQSRELV*
B570J40625_1000230253F019476N/AMNKTKSARIVLDIEWECVDDSDLPSLWDWKRIKLPMDLTKVKYVGIQQSNGPENVTNWMGN*
B570J40625_1000230254F024047GGAMTNVKKSDIVDWLKNVVEKKMVKELDIPNAKVYLSCDRPHPDVILETKNADGDLQIVRFLVI*
B570J40625_1000230256F009135N/AMNKPKYYLTVNLPPNFDEVDAEAIKTDLMAYINSKNQYGAMYGPKSHKKGITVEKVIYRTNED*
B570J40625_1000230257F013524AGGMKTNKEVVARLKEFTNNNCNTTLDPKLCEDIRYLCDEVERFSREIVKANDHMDEDYITIQRYKNKLSKYESF*
B570J40625_1000230258F008688N/AMNRFNKIVLGSLAAILLTAMTVEPPKIKVYLIMSYRGNDLAIEKVYLKKENAQKYCDMYKDSHNYSVEERELTE*
B570J40625_1000230259F007859GAGMKKLLIIALLSTGCTSGMLLRYSYNRALETLPPCSRVHAINNRYITYSMIENSTNSVYVVHTNYYRAYYNCDGKIIKTTSNN*
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