Scaffold B570J40625

Basic Information
Taxon OID	3300002835 Open in IMG/M
Scaffold ID	B570J40625_100028382 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Mendota, WI - (Lake Mendota Combined Ray assembly, ASSEMBLY_DATE=20140605)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300002835 Open in IMG/M

Scaffold ID

B570J40625_100028382 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Mendota, WI - (Lake Mendota Combined Ray assembly, ASSEMBLY_DATE=20140605)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	8948
Total Scaffold Genes	19 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	15 (78.95%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (57.14%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

8948

Total Scaffold Genes

19 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

15 (78.95%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (57.14%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location Name	Lake Mendota, Madison, Wisconsin, USA
Coordinates	Lat. (^o)	43.099444	Long. (^o)	-89.404444	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Mendota, Madison, Wisconsin, USA

Coordinates

Lat. (^o)

43.099444

Long. (^o)

-89.404444

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000403	Metagenome / Metatranscriptome	1177	Y
F000903	Metagenome / Metatranscriptome	843	Y
F001897	Metagenome / Metatranscriptome	620	Y
F003182	Metagenome / Metatranscriptome	502	Y
F009883	Metagenome / Metatranscriptome	311	Y
F016643	Metagenome	245	Y
F024305	Metagenome / Metatranscriptome	206	Y

Sequences

Protein ID	Family	RBS	Sequence
B570J40625_1000283821	F024305	N/A	VAYANNAAALDNLETLMISIISAMPDGYEVGNVNQPQPLEVGAGKYLTADLQVSTYYTN*
B570J40625_10002838213	F009883	GGAG	MNEASIVIMCLIAGAFWAVMAYSVGFKEGERQGYTRGRAVARHAVSADRKAK*
B570J40625_10002838214	F001897	GGA	MASFMDGYEGNKERTDRWIATFPQGRLESHIIEFNAEKGYVLVQAKAFRNQTEIDPAGIDYAYGYLAAYPDKMKRWMIEDTCTSALMRVMALVMGNTEKATKEVMALVKSETPAADYDYWSTKHGDVPSYQTAAEAEQAGTPSFGSSADSAWTADAVPSCSHGSMRWNQSKPDAPKSWAGYFCSEKVKEKQCTPRWYVLRSTGAWEPQI*
B570J40625_10002838215	F000403	GGAG	MSDYVEIIYPQEMKARLMCNGEIVEEYKIEQCDKCSQLRRLDHFGYQKGYDKQDNIIWFCGDCR*
B570J40625_10002838216	F000903	N/A	MIDRIEEVQCMIAAIQHCHDRSADHSSRIVKNLSWFEYVAQMGESMAAELFVAKRLGYDYTPGITWDKSKADVGEHIEVKWSANPASNLWIQDSDRHDRDIAVLVTGNTPKMHIVGWMPVAVAKKPRYRNASQNNWSVPQINLQPIETLMRSNYAHPAI*
B570J40625_10002838217	F003182	AGGAG	MHILQFDCSICSKLYGKPKQRHGLKKGAELTEHEWFAQCMSCGTFGIKIVDDARIEEMSL
B570J40625_1000283826	F016643	N/A	MSVFNPVWRVIIGGETYTNYALANLSITSGRTNIYEQANAGYVNLELINLDQSIIDIEINDAVTIELQDSTNTFVPIFGGTVTEFDIGIAASGVVGINQSVSILALGALSRLPKALTEGVLAKDFDGVQILTILTDLLINSWNEVPAALQWATYDPTEQWQDAQNTGLGEIDTPGNYELANRGASTTNVYSLVSALATSGLGYIYENALGQISYADSTHRSIYLAANGYTDLSAAQALANSLSIQTRAGDIRNEIVIKYGNNSSNEVVNSDATSIGLYGKLAQIITTTIENASDAGDQAAFYLTLRAYPQANFNQITFELTNPEIDDADRDALINIFMGLPLRISDLPLNMASGTYLGFVEGWTWRAAYNSVSVTAILSPLAFSLQAMQWQDVAIAEQWNTISGSLDWATALVVA*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold B570J40625_100028382

Overview

Ecosystem & Geography

Associated Families

Sequences