Scaffold B570J40625

Basic Information
Taxon OID	3300002835 Open in IMG/M
Scaffold ID	B570J40625_100034648 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Mendota, WI - (Lake Mendota Combined Ray assembly, ASSEMBLY_DATE=20140605)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300002835 Open in IMG/M

Scaffold ID

B570J40625_100034648 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Mendota, WI - (Lake Mendota Combined Ray assembly, ASSEMBLY_DATE=20140605)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	7759
Total Scaffold Genes	17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (11.76%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

7759

Total Scaffold Genes

17 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

2 (11.76%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

0 (0.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Cytophagia → Cytophagales → Hymenobacteraceae	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Cytophagia → Cytophagales → Hymenobacteraceae

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location Name	Lake Mendota, Madison, Wisconsin, USA
Coordinates	Lat. (^o)	43.099444	Long. (^o)	-89.404444	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Mendota, Madison, Wisconsin, USA

Coordinates

Lat. (^o)

43.099444

Long. (^o)

-89.404444

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F026552	Metagenome	197	N
F049433	Metagenome	146	N
F049442	Metagenome	146	N
F068494	Metagenome	124	N
F082686	Metagenome	113	N
F086640	Metagenome / Metatranscriptome	110	N
F086682	Metagenome	110	N

Sequences

Protein ID	Family	RBS	Sequence
B570J40625_10003464813	F086640	N/A	MKKFILLEEEKLEIKSMYGLTEAPIPVRQTTVMDTLSVAPNKLLFQNSTNKDNTIFLSAIDGAGKVIPNTTYKYKIGGSYSFFDFSVNIRNLKRDAQGNLIGEVLPSNSMAASAMRSLIPKQNLTKDGWLMIKIPNQKLTEGIQSLKSTKGQTAEIDAGQGINVTLQYIGK*
B570J40625_10003464814	F049433	N/A	MKKFIITEEEKSRILGMHQEHGYNSLNESPSGVGFGPEMNGLKIQKSEQNEQDVEQINDPKIINAVNTVLKKLMMSPKFSTDDTLFSLIEKGDLIKAYRLHRNLNDSVNYVDYELLDDMLNNPETKDSIVKLLPNVKNLLTNFFS*
B570J40625_10003464815	F049442	N/A	MNKENLEQGLTKLLKTFFTKKYYRDFSDLTVVLNEYEEDADDVDDEGNWSSAESYYFTVYSNNFNGSQPELELYNLARELFGNIIGKSNWIDIEFKNYEN*
B570J40625_10003464816	F026552	N/A	MELTNVIEKLLNRDSFLNLLENDIIEKFEVSVSPYESKILVIKMFLNITKDEFIGTEESTPRLSEWEVRGKLWENYNLDTAWWHAHIIPNRILKPLVGKDYFIKILLFVVDKNGIHLFTEN*
B570J40625_1000346485	F086682	N/A	MSKKSPYSNAYKIGLSVFIVLVVLISTIVISVIKSCEPKVSRFFNPKTNMTDTVFYDGPDTIYLPNPQKIIIHDTFRIVCHKKHCEEVKVIKDTTTK*
B570J40625_1000346486	F068494	N/A	MDKLESILVSFFRNIYPFITKIKVDKDSDGDDVEYTLTLFCDGKKIQSYLPISPNFIDGTGKLKKDLLDRPFNHFVSVTDNNQSNIGRAKTLETGLKKDFYLARRMSGSEFKSGPVTLRIVLQ*
B570J40625_1000346487	F082686	N/A	MGRLILTEDDKNDIKLQYQGSVDKKFYDFLRANVEVEGRNVEYFEKPFVLIYIDGKSRLLNNSKKYLVNVLINAYGDDFPNLNDASKRLTAKKYIDELKKQYFYED*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold B570J40625_100034648

Overview

Ecosystem & Geography

Associated Families

Sequences