NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold B570J40625_100041885

Scaffold B570J40625_100041885


Overview

Basic Information
Taxon OID3300002835 Open in IMG/M
Scaffold IDB570J40625_100041885 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, WI - (Lake Mendota Combined Ray assembly, ASSEMBLY_DATE=20140605)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6779
Total Scaffold Genes23 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)19 (82.61%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameLake Mendota, Madison, Wisconsin, USA
CoordinatesLat. (o)43.099444Long. (o)-89.404444Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F041150Metagenome / Metatranscriptome160Y
F043902Metagenome / Metatranscriptome155Y
F054798Metagenome / Metatranscriptome139N
F056376Metagenome / Metatranscriptome137Y
F085623Metagenome / Metatranscriptome111Y

Sequences

Protein IDFamilyRBSSequence
B570J40625_10004188511F041150GGAGMGMGNFAVGSFVIEYDDLKKICPDEIKALEKAKYFKEVGWQTVGQWLAWDDPDQIKDAFYDAILEDKSKPVIRLELSEDQIVEDIFQEYEKLVIALKNTFNKKTGLTLYFDSYDEDGGGRYDNPGDKDGCIFCVDGMVQLTPAGEKFKDIIGERKWTQFG*
B570J40625_10004188514F043902AGGAGMTVQQLRNNGYKVRVLHCRLYNGYHTWQVGGHQYIQQNAPVDPDSKGGSTQVIIDSPDGKHFRGLAMCSKKDNYNKKMGVKIALGRSGVIV*
B570J40625_10004188517F085623N/AVTKLRTIILEFDLIEVHYNKKLKNKPYLVRVFNYNNSDPHELRLNEDDLKNLYNILKEYKYL*
B570J40625_1000418854F056376AGGMNLITCFSNVIGHKEAQELVVDLNQMKSNLSEDFYIKYDEYQDYSKDDNYMVIGNVTQEDWDELNLDMDFMETDIT*
B570J40625_1000418857F054798AGGAGGMIYLYLNETQKLAEIVTELVKLNMGVVAELHGNKWHIEVTQ*
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