NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold B570J40625_100044954

Scaffold B570J40625_100044954


Overview

Basic Information
Taxon OID3300002835 Open in IMG/M
Scaffold IDB570J40625_100044954 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, WI - (Lake Mendota Combined Ray assembly, ASSEMBLY_DATE=20140605)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6444
Total Scaffold Genes18 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (44.44%)
Novel Protein Genes10 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (30.00%)
Associated Families10

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Crocinitomicaceae → unclassified Crocinitomicaceae → Crocinitomicaceae bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameLake Mendota, Madison, Wisconsin, USA
CoordinatesLat. (o)43.099444Long. (o)-89.404444Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004583Metagenome / Metatranscriptome432Y
F006220Metagenome378Y
F007310Metagenome353Y
F013084Metagenome274Y
F015472Metagenome254Y
F018927Metagenome232Y
F033432Metagenome177Y
F048994Metagenome147N
F072322Metagenome121N
F074878Metagenome / Metatranscriptome119N

Sequences

Protein IDFamilyRBSSequence
B570J40625_10004495412F004583AGGAGMKSTRNSDRLREILFSTRHQIVSLKDIQMDMLRIDSKVANQIATQISALEEVYKHQLSLVNQADNVEPKRNGWFSGHIKTKEDRLANIMD*
B570J40625_10004495413F048994N/AMIGTVKIEFGAMNLYVNGVCVATTSTMAGIKHAAKRYNLQGYILATG*
B570J40625_10004495414F006220N/AMKKFKKFIEELAIASGTEMMRASQMRPSTFKDKSKYSRKQKHKNRQDKNSGDSSLQCM*
B570J40625_10004495416F007310N/AMRTVLWNNTERWFNHHHYELLIEDITGFGLNESLCEETVKYMAKRLSDTKYQRRFKTLYTIYENEYDALVEKFNNQADNNGKIEVA*
B570J40625_10004495417F013084N/AMGILSILGLMEETKNTVLSRGHNVKNWLVLGNDCYALECADCKKTVMIKENPLPNEIKVGGEAIAVNCVKPVKEKKLRKK*
B570J40625_10004495418F018927N/AMNKHIEITRHLTVDGTSTYYVVEKSKNSSSIIWNGTCKQAAYQVAYRNARKENTPLYDTLYKAEVDRNGVKHIIPVGNELLEVN*
B570J40625_1000449543F072322GGAGGMETVDFVNATEFFDAMELGHVESDEFLSKFTYGDIRTTFTLVSRGTFLSYLKSFITDCEDIYEKDVVMEALRDYNLSVDVRIKYVNIEA*
B570J40625_1000449545F074878N/AMNTTDKVIVKFRFRTPRMVYSVYFNGMLLTSGYDAQQLGEEYAHKYGVEWLLQDGDKFYSQKGLVK*
B570J40625_1000449546F015472N/AMVVAGWRQVLFTERSRKVMAHGYLNNGGTRWVTDNKIQVTGEVNGKSYDKMRQPMFWEQLGNFAVCYVRVGRTVFCGFTNDNDGTIQLKLEKCRIVR*
B570J40625_1000449547F033432AGGAMSNYRKKFLSLWSAIMEEEKWHKVNSPACKPSCKGWNAWAPLCECGENYCTFKPSGNLEDMQIVIISIPLDF*
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