Scaffold B570J40625_100196447

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold B570J40625_100196447

Scaffold B570J40625_100196447

Overview

Basic Information
Taxon OID	3300002835 Open in IMG/M
Scaffold ID	B570J40625_100196447 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Mendota, WI - (Lake Mendota Combined Ray assembly, ASSEMBLY_DATE=20140605)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	2195
Total Scaffold Genes	7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	5 (71.43%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location Name	Lake Mendota, Madison, Wisconsin, USA
Coordinates	Lat. (^o)	43.099444	Long. (^o)	-89.404444	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F041150	Metagenome / Metatranscriptome	160	Y
F056376	Metagenome / Metatranscriptome	137	Y

Sequences

Protein ID	Family	RBS	Sequence
B570J40625_1001964471	F041150	AGGAG	MGMGSFAVGSFVIEYKDLKKICPDEIKAIEKAKYFKDIGWGTIGQWLSWDDPDNFKDELYASVEEDKSKPVMRLEKDIDSIVEDIFQDYDNLITNLKNAFNKNTGLTLYFDHYNEEDGDRYDNPGDKEGCIFCVDGMVQLTPAGEKFKDIISERKWTQFG*
B570J40625_1001964477	F056376	N/A	GHKEAQELVVDLNQMKSNLSEDFYIKYDESQDYSTDDNYLVIGNVTQEDWDELNLDMDFIEGLA*

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