NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold B570J40625_100202798

Scaffold B570J40625_100202798


Overview

Basic Information
Taxon OID3300002835 Open in IMG/M
Scaffold IDB570J40625_100202798 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, WI - (Lake Mendota Combined Ray assembly, ASSEMBLY_DATE=20140605)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2146
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (85.71%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameLake Mendota, Madison, Wisconsin, USA
CoordinatesLat. (o)43.099444Long. (o)-89.404444Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F022399Metagenome214Y
F023329Metagenome / Metatranscriptome210N
F031460Metagenome / Metatranscriptome182Y
F053253Metagenome141Y
F084156Metagenome / Metatranscriptome112N

Sequences

Protein IDFamilyRBSSequence
B570J40625_1002027981F022399AGGMDKKYKSIYSKNGLEVFVNPEDFWADYKVRLNGHHGKTFKGETAWMDVTRFVHDQAMEFWDFNLDEINDRLTNDIVKEIERRFSDAGI*
B570J40625_1002027982F084156AGGAMVTDLCWYDTKQGDNCQWECSDIPGSFYCKNCNGLRVWNRFAQAYSFYVREGHYGF*
B570J40625_1002027983F053253GAGGMDFDLDTPISKILTDMLDKVEGHVVNCDCVNCNSLEVLAYMIKVEE*
B570J40625_1002027985F023329GGTGGMVEETQDKDKDLAQLESFFKYNISTDEILSGRLKILLADLSWQMDLPTWTKEELDVMCARMDALVEVSNLLYDIQWHRLNWEKRTNG*
B570J40625_1002027986F031460GGAGMAKVIDSVELNVQMWSTVVLSAEEIQDIYPEFADMTDVDDTDELEQALQDHMDMNYLEHIQYADGAMDECTVHFVYEDDGSE*
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