Scaffold contig_10039

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold contig_10039

Scaffold contig_10039

Overview

Basic Information
Taxon OID	3300002844 Open in IMG/M
Scaffold ID	contig_10039 Open in IMG/M
Source Dataset Name	Stormwater retention pond microbial communities from Williamsburg, VA - Sample from Jamestown High School
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	3779
Total Scaffold Genes	7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	6 (85.71%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Pond → Unclassified → Stormwater Retention Pond → Stormwater Retention Pond Microbial Communities From Williamsburg, Va

Source Dataset Sampling Location
Location Name	USA: Williamsburg, Virginia
Coordinates	Lat. (^o)	37.251274	Long. (^o)	-76.791915	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F058557	Metagenome / Metatranscriptome	135	Y
F086839	Metagenome / Metatranscriptome	110	N

Sequences

Protein ID	Family	RBS	Sequence
contig_100393	F058557	N/A	MAIKRYENVDVNTLTFGTDAYGEYTTTITKKFTTRPLVSDVKNSLAITERYRIYQDLIQFTMNYTPWMKDIVDNQNLYSITWRNKDWRITDVLESNDRMSVTLMCYRSDPTTKV*
contig_100397	F086839	AGG	MGVTFAVNGLKETLEAFEDFREQFGDKDAKSKVLIPAVREAMKPVLAMAKALSPKDTGALDRSLYITARRPTRKDMKSRYITPNDSVISLVSSRPIPRKLKQKFHSEYGNLQGKEFKKAKRKFYAEQGIMADARAIANEFGTANMSAKPFMRISLESQAQMVASKLG

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