Scaffold contig

Basic Information
Taxon OID	3300002844 Open in IMG/M
Scaffold ID	contig_10040 Open in IMG/M
Source Dataset Name	Stormwater retention pond microbial communities from Williamsburg, VA - Sample from Jamestown High School
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300002844 Open in IMG/M

Scaffold ID

contig_10040 Open in IMG/M

Source Dataset Name

Stormwater retention pond microbial communities from Williamsburg, VA - Sample from Jamestown High School

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	3704
Total Scaffold Genes	11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	7 (63.64%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (71.43%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

3704

Total Scaffold Genes

11 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

7 (63.64%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (71.43%)

Associated Families

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Taxonomy

All Organisms → Viruses → Predicted Viral

(Source: DeepVirFinder)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Pond → Unclassified → Stormwater Retention Pond → Stormwater Retention Pond Microbial Communities From Williamsburg, Va

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Pond → Unclassified → Stormwater Retention Pond → Stormwater Retention Pond Microbial Communities From Williamsburg, Va

Source Dataset Sampling Location
Location Name	USA: Williamsburg, Virginia
Coordinates	Lat. (^o)	37.251274	Long. (^o)	-76.791915	Alt. (m)	Depth (m)	0
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Williamsburg, Virginia

Coordinates

Lat. (^o)

37.251274

Long. (^o)

-76.791915

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009140	Metagenome / Metatranscriptome	322	Y
F034109	Metagenome	175	N
F034150	Metagenome / Metatranscriptome	175	Y
F034503	Metagenome	174	Y
F040534	Metagenome / Metatranscriptome	161	N
F071155	Metagenome / Metatranscriptome	122	Y
F097199	Metagenome	104	N

Sequences

Protein ID	Family	RBS	Sequence
contig_100401	F009140	N/A	LTHSNTNDNAVSFHYAKYLPELERFGYVIFHDDKWHLTEYGRMEMNRAVSGAAMRIENGSVKEKYDGRELRRNVFRHGCYDFLNHPSRFGDNLVYQKGNV*
contig_1004010	F034150	AGG	MNTGTNAQSKPQFEGDIIKFKSPHSNVWLYDICKRNEKYGWLEWVALNNPTDRQKFVAMTE*
contig_100403	F040534	AGGAG	MNTDKSGAGRIVGLSTLGEPMSEEDFEKKMDRGELDYEYAEYLMDHRPVGNGEILIRLMERNELYDDFKDHMTRDKK*
contig_100405	F034503	AGG	MNKIEAHDILDRRKQGFAVPQYLVNRALVVSGDIAMACPPCQTTRMEGPGVVQGKGTGGLPYPFMAWDNPGFNQRNEGT*
contig_100406	F097199	AGGA	MSEALNRVIEEQQKRIDDLLEGNKKLIERSARVFKQNEELFEAVAKLIDFRMDYDKWEEDRMKTYGSLRHEVRMQMIEAGYCVTCYNFMAHCECDE*
contig_100407	F071155	GAG	MRHDIDWKKVHCKVGQRVPVYPLSDKVQPFIGEVKRIKMNRFGRVSYVIDDKEVMAEELLPAKNQTKLKMRVNQ*
contig_100409	F034109	N/A	MANRKNPFRAQTDFKLELSHEQRTILEVLGKGNMTQGMKVAIDQAGHFYNCGLDPDMNLNFVGLVTTLPNQDDD*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold contig_10040

Overview

Ecosystem & Geography

Associated Families

Sequences