Scaffold contig_10042

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold contig_10042

Scaffold contig_10042

Overview

Basic Information
Taxon OID	3300002845 Open in IMG/M
Scaffold ID	contig_10042 Open in IMG/M
Source Dataset Name	Stormwater retention pond microbial communities from Williamsburg, VA - Sample from Crim Dell
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	3011
Total Scaffold Genes	9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	8 (88.89%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (100.00%)
Associated Families	3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Pond → Unclassified → Stormwater Retention Pond → Stormwater Retention Pond Microbial Communities From Williamsburg, Va

Source Dataset Sampling Location
Location Name	Williamsburg, VA
Coordinates	Lat. (^o)	37.270661	Long. (^o)	-76.7142	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F003265	Metagenome / Metatranscriptome	496	Y
F008183	Metagenome / Metatranscriptome	337	Y
F050321	Metagenome / Metatranscriptome	145	Y

Sequences

Protein ID	Family	RBS	Sequence
contig_100423	F050321	GAGG	MITLNKWYPLVQPTHTARELAFDKAVEKVQEEYKLAVECLKQVKKTEELEVELYNKRGRQNTIELGSFEDRRRFAIFV*
contig_100424	F003265	GGA	MRLFLFLLLLLLSKATAKESCIVSEFYGQSWLGNPTERHQRLSDWLTTNGNHCSSEQLVAIWNNLAMWAGVADSTELRGKILYFYARATEREKK*
contig_100425	F008183	AGG	MLGTDVMAVEGNEIDLVKYGVLWQKVQDMDKKMDKVERQLEELVALANKGRGGLWFGMSIVSGASVIVGYLLNYWKH*

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