NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0004694J43177_10239

Scaffold Ga0004694J43177_10239


Overview

Basic Information
Taxon OID3300002860 Open in IMG/M
Scaffold IDGa0004694J43177_10239 Open in IMG/M
Source Dataset NameArctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA - Graham LP Incubations RNA 1 (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)548
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil → Arctic Peat Soil Microbial Communities From The Barrow Environmental Observatory Site, Barrow, Alaska, Usa

Source Dataset Sampling Location
Location NameBarrow Environmental Observatory site, Alaska, USA
CoordinatesLat. (o)71.2999Long. (o)-156.61Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013836Metagenome / Metatranscriptome268Y

Sequences

Protein IDFamilyRBSSequence
Ga0004694J43177_102391F013836N/AFQVIRFAALPTTGMPGTEHRNRERCTLRLSAPQQPLSPATGSMLPGASQPFFSPHRGRSLVTAFPSPTTTPACAKPIPGSKVLTCYFAPCYLALLPVRPFCSTTVAGSPRLRPLHRFWPVAKSPNSPADGASCLHSPPGLLPPSGSKRSAGFAACQARLPNPPDFLSLPAARFYH*

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