NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0006819J43187_103980

Scaffold Ga0006819J43187_103980


Overview

Basic Information
Taxon OID3300002869 Open in IMG/M
Scaffold IDGa0006819J43187_103980 Open in IMG/M
Source Dataset NamePeat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 20 (Metagenome Metatranscriptome, Counting Only)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)705
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil → Peatlands Soil Microbial Communities From Germany And Austria, That Are Sulfate Reducing

Source Dataset Sampling Location
Location NameGermany: Weissenstadt
CoordinatesLat. (o)50.13Long. (o)11.88Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F055497Metagenome / Metatranscriptome138Y

Sequences

Protein IDFamilyRBSSequence
Ga0006819J43187_1039801F055497N/AMSARVRLFNDQGQLVAEWMSSEGAYVDNPAAGHVTAANGVLPAKGGLDVVGTGAFPAYPFNNQGGSPFTSPSSNLNGYNYLPAGTKLLHVLLAGLPQQVPLGSDITGVYFGDPIATGFACDFELDCYPAPYAQYPFPYTGIAGAPDYTGGWTAEADFVPWYSANAGTQELASGGLQTTSAPGSYAQYYPPVNGLLMGESYHIIPGTTATSGISLTEDMALSSTFVGHTMAPNHL
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.