NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI25614J43888_10001879

Scaffold JGI25614J43888_10001879


Overview

Basic Information
Taxon OID3300002906 Open in IMG/M
Scaffold IDJGI25614J43888_10001879 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_60cm
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6392
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (45.45%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameLaytonville, California, USA
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007243Metagenome / Metatranscriptome355Y
F022093Metagenome / Metatranscriptome216Y
F079016Metagenome / Metatranscriptome116Y
F087658Metagenome / Metatranscriptome110Y

Sequences

Protein IDFamilyRBSSequence
JGI25614J43888_100018795F007243N/AMTPIHATVLSADRFRDQYRLIIQLVPSEFLGPFERLRFKKNPYCGSFGTSVDKSWLTLDYRKDPGFKAGEAFPLWRTD*
JGI25614J43888_100018796F087658N/AMPYDPNPRFTPYPIEPMPQALYFQITLEPHLKHSGVATGRKILFLAEVPVTTAKEASEVPEDDGKVYETAERLAANLTCMAMTGEASQPGEDEMHVSFQSMSGMSADLKRRRPDAEKDGVRIWLLGARPE*
JGI25614J43888_100018797F079016N/AMKPGEIDSDETNDRVQELWGELTGIDDRTDQERTFTIYKRSGSLLVISDTGCERLVGPDQGLSKTRIFQEVMYQFRVHAVRPKPSFYPLSD*
JGI25614J43888_100018799F022093N/AMRVEFSRGLRPDSPRFVLMIEIPDSAAAELNARKVSLETRAYEVAFETTSADRSNKPEHHMSLMSCTRGKVKNLESLGEPSLLAPDACRAWVIKRPSPLQELLDKGWQSRQKNPGSKG*
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