NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI25613J43889_10023109

Scaffold JGI25613J43889_10023109


Overview

Basic Information
Taxon OID3300002907 Open in IMG/M
Scaffold IDJGI25613J43889_10023109 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_40cm
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1756
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameLaytonville, California, USA
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005133Metagenome / Metatranscriptome411Y
F062085Metagenome / Metatranscriptome131Y
F074441Metagenome / Metatranscriptome119Y
F084681Metagenome / Metatranscriptome112Y

Sequences

Protein IDFamilyRBSSequence
JGI25613J43889_100231091F005133N/AAAAGAAIGAVKGVKDKNKKEAAEGAALGALTAYLMESGRGHELNLPKGAKLELELERALYLVKE*
JGI25613J43889_100231092F062085GGAMEKLQAFQAAACEGGFVAIEESEEDTVLWLKKATVEAEDRICLDSLTNSATVYWATIPWKINSKTFREASALRAWILSRPGALAS*
JGI25613J43889_100231093F074441N/AMTNHEALLRLSVDKNDHLAVTSLHENNAEIIRTTVMRYFGSGTAAENVEFELMKRMAGHARLYEDSEDLDVWLAGCANTECDRMRNEAIHDKANTD*
JGI25613J43889_100231094F084681AGGAGMATHEHRITPRFKLHSRLSFHRMETLTEGEHQARTINISTRGVYFATNVILCVGEALEVLLEMPKRVTGVKAGIRRFAGRVTHIESTNMLPGLSGIGVQLLYYERDLAGISKPNVL*
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