NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI25382J43887_10000469

Scaffold JGI25382J43887_10000469


Overview

Basic Information
Taxon OID3300002908 Open in IMG/M
Scaffold IDJGI25382J43887_10000469 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 08_20_2013_1_40cm
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)13602
Total Scaffold Genes16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (37.50%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameAngelo Coastal Reserve, California, USA
CoordinatesLat. (o)39.718176Long. (o)-123.652732Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001093Metagenome / Metatranscriptome780Y
F013994Metagenome / Metatranscriptome266N

Sequences

Protein IDFamilyRBSSequence
JGI25382J43887_1000046915F013994N/AMQPVQPYYQYQYPQNAWEVARTNKINNSLTGLLLLVIGVLISWIPFAGAIGGIVGFIGAILVLVGREPFGEXHVRNTTLALILFIVGITVTIFGFFYALVYGVSSAITGGSSSSILXLFSIIFVIGGAIFGLSEVLLTYSLQKGPGRTLLWTAYAISIALSLVNLFILPFSSGGFWTIYFGTGVFLFTGFLAAIPAAIYGTAFYLARERIVKHEIPPPLTQPSTGKPPW*
JGI25382J43887_100004698F001093N/AMASDTKNRESWDEQESSARSISQSIPLKLSRVFRFNDPQTGAPQISDFPDTNPTGDTPLEIRMKHFTEIENFTFLAHVLGHELGGTTPRPIRTVTDLQVPDEXFQNFVNTAKTASVTDEELADSTLDVGINWEHFVASNDNLLLPDHPLKISDVLMQEKIDSLDVITEAFVREINLRGIEKQTGTKPRK*
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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