Basic Information | |
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Taxon OID | 3300002908 Open in IMG/M |
Scaffold ID | JGI25382J43887_10002001 Open in IMG/M |
Source Dataset Name | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 08_20_2013_1_40cm |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 8712 |
Total Scaffold Genes | 9 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 5 (55.56%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (33.33%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatimonas → Gemmatimonas aurantiaca | (Source: IMG/M) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa |
Source Dataset Sampling Location | ||||||||
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Location Name | Angelo Coastal Reserve, California, USA | |||||||
Coordinates | Lat. (o) | 39.718176 | Long. (o) | -123.652732 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F022291 | Metagenome / Metatranscriptome | 215 | Y |
F036161 | Metagenome / Metatranscriptome | 170 | Y |
F040559 | Metagenome / Metatranscriptome | 161 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
JGI25382J43887_100020013 | F036161 | N/A | VDERTSARAARLLMAAGYDERKVAALLGGIRAWYRAGYRLERWTDRA* |
JGI25382J43887_100020014 | F022291 | AGGAGG | MTPPLAHDSSDAVPDEGAAVWRITAAEAHELVAAGRGVLVDTRDARLFDNAHAAGALSLPLSTIEAAHGQVPGASLPPDRVLIFYCA* |
JGI25382J43887_100020016 | F040559 | N/A | MLGSCLELRSQTPVRPVDDGFPRYPVASVETQFAEFWRQRAQHPYVCLIGRVALDSSAATFVQVDSLRLADEPWTTCNDPAVMGLVKMVDEMPAGVTMEAWGETMLQQLVAVALRQPNWRIIGAMFAIASVNMSDSTAVDAPSLVPAFLWLPRTADNVRVLDQLTPLQ* |
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