Scaffold JGI25382J43887_10087084

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold JGI25382J43887_10087084

Scaffold JGI25382J43887_10087084

Overview

Basic Information
Taxon OID	3300002908 Open in IMG/M
Scaffold ID	JGI25382J43887_10087084 Open in IMG/M
Source Dataset Name	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 08_20_2013_1_40cm
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1669
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location Name	Angelo Coastal Reserve, California, USA
Coordinates	Lat. (^o)	39.718176	Long. (^o)	-123.652732	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F007258	Metagenome / Metatranscriptome	354	Y
F017462	Metagenome / Metatranscriptome	240	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI25382J43887_100870841	F007258	GGAGG	MMMNATCKDRERIFEDGTPGEWAALEAHSANCPVCAEELKAWKSLSVAAQEMRDYTDSPSFWPRIERALAEEAVRKTQRAERRSWLSFLPSVPLSWQTAVAGAFVLVLTISAGWIYV
JGI25382J43887_100870843	F017462	N/A	MRAFLRSSNDVSAVVGVLLLVVPTYFVAMSALRYDAPGLHFFDSPILILGTLAIAFAVNARSILSVKVEPEKPPVLKIALSLRIWNLAEILLALLLLGALFAYAFVENFEPRLVR*

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