Scaffold JGI25388J43891

Basic Information
Taxon OID	3300002909 Open in IMG/M
Scaffold ID	JGI25388J43891_1000856 Open in IMG/M
Source Dataset Name	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_27_2013_2_20cm
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300002909 Open in IMG/M

Scaffold ID

JGI25388J43891_1000856 Open in IMG/M

Source Dataset Name

Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_27_2013_2_20cm

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	6116
Total Scaffold Genes	8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	5 (62.50%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Scaffold Components

Scaffold Length (bps)

6116

Total Scaffold Genes

8 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

5 (62.50%)

Novel Protein Genes

2 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (50.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria → Acidobacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location Name	Angelo Coastal Reserve, California, USA
Coordinates	Lat. (^o)	39.73825	Long. (^o)	-123.6301	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Angelo Coastal Reserve, California, USA

Coordinates

Lat. (^o)

39.73825

Long. (^o)

-123.6301

Alt. (m)

Depth (m)

Location on Map

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Family	Category	Number of Sequences	3D Structure?
F014311	Metagenome / Metatranscriptome	264	Y
F097035	Metagenome	104	Y

Family

Sequences

Protein ID	Family	RBS	Sequence
JGI25388J43891_10008562	F097035	N/A	VAVLGLCLLVVFSLRHDGTDKHLNDNQAYVSIVGVSAVLLPPLDAIVGNDDYRKLRTRPELKSVRQMFWRDRRRIVLLWLGELQKDVHTLWKFRRFLARNGLLVTFREEAGVVFAALLALLFLKVVRVAVFIFGPFVLHGALGNARLLVERLSTWGIAPLARVPAARKAEIEQEWQQLLAMGIRTG*
JGI25388J43891_10008565	F014311	GAG	MILREVIPTLIACSCLSPIAAAQTIFPSRPTIPRSSTVEHAPDFGAVVVPITSVKFAPSVKLGITGKLGPSLGIDANFGTGFCLDAACRFIVTNYHVAMTTRAGKIKGEKIIHRYLATGSDDRGATANPLPNMDVLPFAMSRDLAMFELRWPLSHHHGLSFSLDELEAGQEVDIYGYPKGIVNPIRKLARFPAKFKGPTTSGLLAFDYELSADQPIRIAGASGGIVVDRKTEKIVGVLSGTTETMALAVPVQTLVDFVSKVQPFLAQRIFPTANAVSPVSGNLYPKFAPHPDYNPKYIPGVSFGLAHRPEESPEVKVLRNKAQSLADSMRNFIAVQTSEWGSGDKEPSAQAEYEVRVIDGVQRFREYPDGKKELEDIPPPRLSSSVRASYEWSTLPKMVGTEWRLKVRQAADVVVNKQRMKVFQYYSSVENNLCPFAPIEDYGFFTIQKEVAVACYGEVWTDEDTNILRISENLELSDKLKAYRGWQEYQIVLTYGWLTLAHEPRLVPITIFTEGRYGKHVDWCRGQFTNYQRFDSEVRIIANDANR*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold JGI25388J43891_1000856

Overview

Ecosystem & Geography

Associated Families

Sequences