Scaffold JGI25617J43924

Basic Information
Taxon OID	3300002914 Open in IMG/M
Scaffold ID	JGI25617J43924_10010658 Open in IMG/M
Source Dataset Name	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300002914 Open in IMG/M

Scaffold ID

JGI25617J43924_10010658 Open in IMG/M

Source Dataset Name

Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	2998
Total Scaffold Genes	6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (50.00%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (60.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

2998

Total Scaffold Genes

6 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

3 (50.00%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (60.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria → Acidobacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location Name	Laytonville, California, USA
Coordinates	Lat. (^o)	39.7392	Long. (^o)	-123.6308	Alt. (m)	Depth (m)
Location on Map

Zoom:	Powered by OpenStreetMap^©

Source Dataset Sampling Location

Location Name

Laytonville, California, USA

Coordinates

Lat. (^o)

39.7392

Long. (^o)

-123.6308

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000624	Metagenome / Metatranscriptome	977	Y
F000703	Metagenome / Metatranscriptome	928	Y
F002853	Metagenome / Metatranscriptome	526	Y
F032795	Metagenome / Metatranscriptome	179	Y
F099022	Metagenome	103	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI25617J43924_100106582	F099022	GGA	MKLSSKKVVLAVVFAVPLLLLFADEYPALRFRGDGHFSGGPVFGYWIRLRPIPFHRGGEYVFHLRGTPNEEMSLQLYAEGKTGDNRSELTNLNTQLEALLVDQNGRVVCRAAGIVPKENEPCDDCKIPTDEEIAARFQREWVLMSGPDETAYWHANCLRMRLKPSDSYTLTLRIQAVDPKTPKINLIPTLEGGQLDLP*
JGI25617J43924_100106583	F000624	AGGA	MPAHWYAVLTAVAAAGVQFVLFLRWLHRRMRNDEITCAFVRDIATNHLPHIYNALQKIAAQQGIELDDTPLVRFVDLNGHRRGS*
JGI25617J43924_100106584	F002853	GAGG	MGRGAQANTRQMTDEERATIDALNQQFLGQQQQVGNMLLPQYQSILNNPGLSAADKAAVTGQSQGSLASAFDSLQQSAQNRLARTRNSAGFGELTDELARQKGIEEASQAQKNQLAFTNTAFQRQMAALQGLSGLFGVDSNLLGRTLGIPAELLNVRANASRNTGGGFFSALGSGLGSALGALPSAFL*
JGI25617J43924_100106585	F000703	N/A	MQVRNYQESDLAALRAIHAAQSFDYTLPHLRNPLFVTKLVLAQDSTPRNECGGTIVRAHTDAADHDSEVNGPATASPEKILGAAFLRLTAEAYLLLDPRAGTPRERWQWLLALHAAAERDAWQRGLEDVHAWLPPPIARKFGKRIARLGWLRDDAWTPYCKRLNSTPGL*
JGI25617J43924_100106586	F032795	N/A	WRAYSQYIGSLPSAPVSFGAPPIAVAGGGASGPAPLPSSGSGVFPNGVPRGGNGFGIHPGSRIARQTVL*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold JGI25617J43924_10010658

Overview

Ecosystem & Geography

Associated Families

Sequences