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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300002914 Open in IMG/M |
| Scaffold ID | JGI25617J43924_10040707 Open in IMG/M |
| Source Dataset Name | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 1677 |
| Total Scaffold Genes | 3 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 1 (33.33%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (33.33%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Laytonville, California, USA | |||||||
| Coordinates | Lat. (o) | 39.7392 | Long. (o) | -123.6308 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F012292 | Metagenome / Metatranscriptome | 282 | Y |
| F054446 | Metagenome | 140 | Y |
| F063996 | Metagenome | 129 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| JGI25617J43924_100407071 | F054446 | AGGA | VLGIKAENAENRVILREAADQLGRLTKLLPEKIDASAAARLDPASTPSNEPRAEQDGKVLLSERVARQLEQLRGGVRQMLLTSWTLDGAFEQVANLVTAERDKYRAATRAQKGIWLSAASRIVIGLLAAGLASLLILVFADVVQTQLDAATSSSTVAD |
| JGI25617J43924_100407072 | F063996 | N/A | VKKQYFFPCLFVRAAKGLALLVILIGIGFCLLRYYQASIAAGAVAYQSSANLQRALDRLKDAFLSTEQIVNSFNAGNQSTTPSVQGPRFPVKIDSSDDLARIAAELSRVDHERQQLKESIVSRFETLVKGIEEKLHAYAAVLQPSPSPTAANTQGLVPTVTPAPTTTSPEESLFSSKLSIPKLRKGTKT* |
| JGI25617J43924_100407073 | F012292 | N/A | STPSPRSSSPAAVETAVKNRMITDFKEQTQSVLSRVGEATGNFHEIDRLDLVQQLPLPVSESVSSLVDRARDFRAKLGYETALSECRTETATVDALSAIDQITRNIAGKDASAANSRLTDFLKSNPEPMVDNQKPLWRYLTSIRLLCNRLEKEAEIHLQRAQASASAGRTGDAIREYQEAYRAFPNPATAEKTRQLQSNSLGL* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |