NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI26061J44794_1009317

Scaffold JGI26061J44794_1009317


Overview

Basic Information
Taxon OID3300002919 Open in IMG/M
Scaffold IDJGI26061J44794_1009317 Open in IMG/M
Source Dataset NameMarine microbial communities from the Southern Atlantic Ocean, analyzing organic carbon cycling - Bottom_A/KNORR_S2/LV
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2725
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (66.67%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From The Southern Atlantic Ocean Affecting The Dissolved Organic Carbon Pool

Source Dataset Sampling Location
Location NameSouth Atlantic Ocean
CoordinatesLat. (o)-37.9728Long. (o)-44.9905Alt. (m)Depth (m)5110
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006364Metagenome / Metatranscriptome375Y
F007608Metagenome / Metatranscriptome348Y
F012070Metagenome284Y
F017906Metagenome238Y

Sequences

Protein IDFamilyRBSSequence
JGI26061J44794_10093171F017906N/AMDTCEIEGGENGQFDIFRNGELFLSKEDMGRFPTKEDVDDMIEELEP
JGI26061J44794_10093173F007608AGGAGMSQENKYEKLPNSMYPKVRQQVTDRIATFEKVIEEHAVAQKEALKMIYEQLEEAKNDLKYLDEVN*
JGI26061J44794_10093174F006364AGGAGMELEIDNDTRKMRIINYLDYMDDKSLQEISVALYNLSIRRREVKKQKELMNESGK*
JGI26061J44794_10093177F012070GGAMPIEIKMIEAANESYDDYILYEIXCDYCDKEYTIKYMMNKRPKQSIECCPFCSNLIEEPAEIIDDEEXGWD*
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