NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI26061J44794_1020299

Scaffold JGI26061J44794_1020299


Overview

Basic Information
Taxon OID3300002919 Open in IMG/M
Scaffold IDJGI26061J44794_1020299 Open in IMG/M
Source Dataset NameMarine microbial communities from the Southern Atlantic Ocean, analyzing organic carbon cycling - Bottom_A/KNORR_S2/LV
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1494
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From The Southern Atlantic Ocean Affecting The Dissolved Organic Carbon Pool

Source Dataset Sampling Location
Location NameSouth Atlantic Ocean
CoordinatesLat. (o)-37.9728Long. (o)-44.9905Alt. (m)Depth (m)5110
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013649Metagenome269Y

Sequences

Protein IDFamilyRBSSequence
JGI26061J44794_10202992F013649N/AMSNILDKELSILERLPSSCRMREHDEAGKVSKKPKKKKHYDEHFNKDWDKDLWE*

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