Scaffold JGI26061J44794_1026258

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold JGI26061J44794_1026258

Scaffold JGI26061J44794_1026258

Overview

Basic Information
Taxon OID	3300002919 Open in IMG/M
Scaffold ID	JGI26061J44794_1026258 Open in IMG/M
Source Dataset Name	Marine microbial communities from the Southern Atlantic Ocean, analyzing organic carbon cycling - Bottom_A/KNORR_S2/LV
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1225
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From The Southern Atlantic Ocean Affecting The Dissolved Organic Carbon Pool

Source Dataset Sampling Location
Location Name	South Atlantic Ocean
Coordinates	Lat. (^o)	-37.9728	Long. (^o)	-44.9905	Alt. (m)		Depth (m)	5110
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F011704	Metagenome / Metatranscriptome	288	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI26061J44794_10262583	F011704	AGAAG	MNIDDFQELIDLTDYLAMSNEYLIRKFTEGGNYLIIDTFGDFLILERDKVDAVFSTIWNDLYGPISEEIPHILN*

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