Basic Information | |
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Taxon OID | 3300002920 Open in IMG/M |
Scaffold ID | Pfga_1046276 Open in IMG/M |
Source Dataset Name | Hot springs microbial communities from Mammoth Hot Springs, Yellowstone National Park, Wyoming, USA-MHS Pond Facies_Gas lift |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | University of Illinois, Urbana-Champaign |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 1463 |
Total Scaffold Genes | 3 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Novel Protein Genes | 2 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Associated Families | 2 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → Terrabacteria group → Deinococcus-Thermus → Deinococci → Thermales → Thermaceae → Thermus | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Thermal Springs → Unclassified → Unclassified → Hot Springs → Hot Springs Microbial Communities From Mammoth Hot Springs, Yellowstone National Park, Wyoming, Usa |
Source Dataset Sampling Location | ||||||||
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Location Name | Yellowstone Mammoth Hotsprings | |||||||
Coordinates | Lat. (o) | 44.9766 | Long. (o) | -110.7016 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F035590 | Metagenome / Metatranscriptome | 171 | N |
F049435 | Metagenome / Metatranscriptome | 146 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Pfga_10462762 | F049435 | N/A | MFRCFINLLPASRAQSEIVFYARTQPFIITKLALRIYLGFIADDSSPTYVENVKALMRAQEGRIMSAQNTKLFTDPILIYDVFAVNTPDGVQLDGFFDLSFYAGQASELQNCFNKISNDLEETRKVLSKYASPNLSAISVSAYISDLNQIYQSLEKSLKPIVESGALKLSATAAEYIHNFILQLFYRDVREIVYEVWDVNTLVVADSSNQYFDVFNTWDDEAEQRGWEFPAFDNQP* |
Pfga_10462763 | F035590 | N/A | MMSMNKKKLILEQLERLIEHHPCNGRDFFYLSLDGIVTLSFSVDNNGIVTLEQASVDGQFAIDLNRI* |
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